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020 _a3319437496
020 _a3319437518
_q(electronic bk.)
020 _a9783319437491
020 _a9783319437514
_q(electronic bk.)
020 _z9783319437491
_q(print)
035 _a(OCoLC)970041786
_z(OCoLC)970610480
_z(OCoLC)970798265
_z(OCoLC)974651251
_z(OCoLC)981109714
_z(OCoLC)981890052
_z(OCoLC)1005817996
_z(OCoLC)1011950305
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050 4 _aQR115
_b.A675 2017 EB
245 0 0 _aApplied genomics of foodborne pathogens
_cXiangyu Deng, Henk C. den Bakker, Rene S. Hendriksen, editors.
264 1 _aCham, Switzerland
_bSpringer
_c[2017]
300 _a1 recurso en línea
336 _aTexto
_btxt
_2rdacontent
337 _aelectrónico
_bc
_2rdamedia
338 _arecurso electrónico
_bcr
_2rdacarrier
347 _atext file
_bPDF
_2rda
490 0 _aFood microbiology and food safety
500 _aSpringerLink
_bSpringer Biomedical and Life Sciences eBooks 2017 English+International
504 _aIncluye referencias bibliográficas e índice
505 0 _aPreface; Contents; Contributors; Chapter 1: Role of€Whole Genome Sequencing in€the€Public Health Surveillance of€Foodborne Pathogens; Introduction; Current Workflows in€the€Public Health Laboratories; The Ideal Public Health Laboratory System; Whole Genome Sequencing in€Public Health; Combining Reference Characterization and€Subtyping in€Whole Genome Sequencing Based System for€Public Health; Conclusions; References; Chapter 2: Global Microbial Identifier; Introduction.
505 8 _aBioinformatic Analysis of€Data Prioritization of€Additional Clusters; QA/QC; The Promise of€Uniform Workflows and€the€Reality; References; Chapter 4: Bioinformatics Aspects of€Foodborne Pathogen Research; Introduction; Sequencing Technologies; Bioinformatics Approaches; Read Mapping Based Approaches; De Novo Approaches; De Novo Assembly and€the€Basics of€Comparative Genomics; Comparative Genomics; Phylogenetics; Homologous Recombination; Genomic Epidemiology of€Foodborne Pathogens; Microbiome Research and€Foodborne Pathogens; General Principles and Pipelines.
505 8 _aExamples of€Microbiome Approaches in€Study of€Foodborne Pathogens and€Spoilage OrganismsReferences; Chapter 5: The CGE Tool Box; Introduction; Prokaryotic Taxonomy; SpeciesFinder; Reads2Type; TaxonomyFinder; KmerFinder; Performance of€Methods for€Species Identification; Subtyping; The MLST Web-Service; Serotype; Serotyping of€E. coli; Serotyping of€Salmonella; Plasmids; Phenotyping; ResFinder; MyDbFinder; How to€Make a€Database for€MyDbFinder; VirulenceFinder; PathogenFinder; Phylogeny; SNPtree, CSIPhylogeny, and€NDtree; Metagenomic Samples; Work in€Progress.
505 8 _aNext Generation Sequencing and€Whole Genome Sequencing: A€New Potential for€Integrated Surveillance of€Infectious Diseases The Global Microbial Identifier (GMI) Initiative; Landscaping the€Global Microbial WGS Field; GMI the€Network; GMI the€Database; GMI the€Software; Metadata and€Depth of€Analysis; Quality Assurance and€Testing; Concluding Remarks; References; Chapter 3: The Use of€Whole Genome Sequencing for€Surveillance of€Enteric Organisms by€United States Public Health Laboratories; Introduction; Traditional Foodborne Disease Subtyping Methods.
505 8 _aWGS as€a€Subtyping Method for€Surveillance Current Workflow for€WGS-Based Surveillance in€Wadsworth Center/NY State Dept. of€Health; Three WGS Case Studies; Case Study 1, a€Retrospective Study that Resolved a€Cluster in€an€Endemic PFGE Type; Case Study 2 a€Near Real-Time Study that Revealed Multiple PFGE Types in€a€Single Genomic Cluster; Case Study 3: a Real-Time Analysis of a Cluster Associated with Bean Sprouts; Current State of€Whole Generation Sequencing at€Public Health Laboratories; Challenges to US PulseNet Laboratories of Adopting WGS; Cost and€Efficiency.
520 3 _aThis book provides a timely and thorough snapshot into the emerging and fast evolving area of applied genomics of foodborne pathogens. Driven by the drastic advance of whole genome shot gun sequencing (WGS) technologies, genomics applications are becoming increasingly valuable and even essential in studying, surveying and controlling foodborne microbial pathogens. The vast opportunities brought by this trend are often at odds with the lack of bioinformatics know-how among food safety and public health professionals, since such expertise is not part of a typical food microbiology curriculum and skill set. Further complicating the challenge is the large and ever evolving body of bioinformatics tools that can obfuscate newcomers to this area. Although reviews, tutorials and books are not in short supply in the fields of bioinformatics and genomics, until now there has not been a comprehensive and customized source of information designed for and accessible to microbiologists interested in applying cutting-edge genomics in food safety and public health research. This book fills this void with a well-selected collection of topics, case studies, and bioinformatics tools contributed by experts at the forefront of foodborne pathogen genomics research.
650 7 _aMicrobiología alimentaria
_2embne
_0(OCoLC)fst00930535
_0
_9150782
700 1 _aBakker, Henk C. den,
_eeditor literario
700 1 _aDeng, Xiangyu,
_eeditor literario
700 1 _aHenksen, Rene S.,
_eeditor literario
856 4 0 _uhttps://go.openathens.net/redirector/universidadeuropea.es?url=http://link.springer.com/10.1007/978-3-319-43751-4
_zAcceso a este recurso digital (usuarios Universidad Europea de Madrid)
988 _aEBOOK, asignarmaterias, EBSPRINGER_2017B
998 _b02/2018
_dz
_e-
_zSI
999 _c95263
_d95263
_x1