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020 _a9781071617670
024 7 _a10.1007/978-1-0716-1767-0
_2doi
040 _aES-MaUEC
_bspa
_cES-MaUEC
_dES-MaUEC
050 4 _aQH324.2
_b2022 EB
245 0 0 _aComputational Methods for Estimating the Kinetic Parameters of Biological Systems
_cedited by Quentin Vanhaelen
250 _a1st edition 2022
264 1 _aNew York, NY
_bSpringer International Publising
_c2022
300 _a1 recurso en línea (XI, 379 páginas)
_b105 ilustraciones, 96 ilustraciones a color
336 _atexto
_btxt
_2rdacontent
337 _aelectrónico
_bc
_2rdamedia
338 _arecurso electrónico
_bcr
_2rdacarrier
347 _aarchivo de texto
_bPDF
490 0 _aMethods in Molecular Biology
_x1940-6029
_v2385
505 0 _aCurrent Approaches of Building Mechanistic Pharmacodynamic Drug-Target Binding Models -- An Extended Model Including Target Turnover, Ligand-Target Complex Kinetics, and Binding Properties to Describe Drug-Receptor Interactions -- Beyond the Michaelis-Menten: Bayesian Inference for Enzyme Kinetic Analysis -- Multi-Objective Optimization Tuning Framework for Kinetic Parameter Selection and Estimation -- Relationship between Dimensionality and Convergence of Optimization Algorithms: A Comparison between Data-Driven Normalization and Scaling Factor-Based Methods Using PEPSSBI -- Dynamic Optimization Approach to Estimate Kinetic Parameters of Monod-Based Microalgae Growth Models -- Automatic Assembly and Calibration of Models of Enzymatic Reactions Based on Ordinary Differential Equations -- Data Processing to Probe the Cellular Hydrogen Peroxide Landscape -- Computational Methods for Structure-Based Drug Design through Systems Biology -- Model Setup and Procedures for Prediction of Enzyme Reaction Kinetics with QM-Only and QM:MM Approaches -- The Role of Ligand Rebinding and Facilitated Dissociation on the Characterization of Dissociation Rates by Surface Plasmon Resonance (SPR) and Benchmarking Performance Metrics -- Computational Tools for Accurate Binding Free Energy Prediction -- Computational Alanine Scanning Reveals Common Features of TCR/pMHC Recognition in HLA-DQ8-Associated Celiac Disease -- Umbrella Sampling-Based Method to Compute Ligand-Binding Affinity -- Creating Maps of the Ligand Binding Landscape for Kinetics-Based Drug Discovery -- Prediction of Protein-Protein Binding Affinities from Unbound Protein Structures -- Parameter Optimization for Ion Channel Models: Integrating New Data with Known Channel Properties.
520 _aThis detailed book provides an overview of various classes of computational techniques, including machine learning techniques, commonly used for evaluating kinetic parameters of biological systems. Focusing on three distinct situations, the volume covers the prediction of the kinetics of enzymatic reactions, the prediction of the kinetics of protein-protein or protein-ligand interactions (binding rates, dissociation rates, binding affinities), and the prediction of relatively large set of kinetic rates of reactions usually found in quantitative models of large biological networks. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of expert implementation advice that leads to successful results. Authoritative and practical, Computational Methods for Estimating the Kinetic Parameters of Biological Systems will be of great interest for researchers working through the challenge of identifying the best type of algorithm and who would like to use or develop a computational method for the estimation of kinetic parameters.
988 _aSpringer_Protocols_2022
650 7 _2embne
_9160489
_aBioinformática
776 0 8 _iPrinted edition:
_z9781071617663
776 0 8 _iPrinted edition:
_z9781071617687
776 0 8 _iPrinted edition:
_z9781071617694
856 4 0 _uhttps://go.openathens.net/redirector/universidadeuropea.es?url=https://doi.org/10.1007/978-1-0716-1767-0
_zAcceso a este recurso digital (usuarios Universidad Europea de Madrid)
942 _2lcc
_cLE
998 _b07/2023
_dz
_eb
_zSI