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020 _a9781493999040
024 7 _a10.1007/978-1-4939-9904-0
_2doi
040 _aES-MaUEC
_bspa
_cES-MaUEC
_dES-MaUEC
050 4 _aRB155.5
_b2020 EB
245 0 0 _aChimeric RNA :
_bMethods and Protocols
_cedited by Hui Li, Justin Elfman
250 _a1st edition 2020
264 1 _aNew York, NY
_bSpringer International Publising
_c2020
300 _a1 recurso en línea (XII, 262 páginas)
_b56 ilustraciones, 52 ilustraciones a color
336 _aTexto
_btxt
_2rdacontent
337 _aelectrónico
_bc
_2rdamedia
338 _arecurso electrónico
_bcr
_2rdacarrier
347 _aarchivo de texto
_bPDF
490 0 _aMethods in Molecular Biology
_x1940-6029
_v2079
505 0 _aPrediction, Characterization, and In Silico Validation of Chimeric RNAs -- Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope -- Identification of Chimeric RNAs Using RNA-Seq Reads and Protein-Protein Interactions of Translated Chimeras -- Gene Fusion Discovery with INTEGRATE -- Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit -- Detection and Measurement of Chimeric RNAs by RT-PCR -- Detection of Group II Intron-Generated Chimeric mRNAs in Bacterial Cells -- RNase Protection Assay -- Validation of Chimeric Fusion Peptides Using Proteomics Data -- NanoString nCounter Technology: High-Throughput RNA Validation -- Knockdown of Chimeric RNA by RNAi -- Overexpression of Chimeric RNA by Retroviral Transduction -- Separation of Nuclear and Cytoplasmic Fractions for Chimeric RNA Characterization -- Confirmation of Transcriptional Read-Through Events by RT-PCR -- Validating Gene Fusion as the Source of Chimeric RNAs -- Chimeric RNA and Exosomes-Based Liquid Biopsy -- SMaRT for Therapeutic Purposes -- Case Study: Landscape of Chimeric RNAs in Bladder Cancer -- Case Study: The Recurrent Fusion RNA DUS4L-BCAP29 in Non-Cancer Human Tissues and Cells.
520 _aThis book provides numerous methods for identification, validation, and functional characterization of chimeric RNAs, herein described as any transcript which contains the nucleotide sequence of two distinct parental genes. Beginning with identification and characterization through bioinformatics tools, the book continues with experimental validation using RT-PCR, hybridization methods for RNA, and the use of mass spectrometry data for fusion protein validation, as well as functional and mechanistic studies of chimeric RNAs and translational applications. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Chimeric RNA: Methods and Protocols is an ideal guide to this expansive field and an inspiration to researchers seeking to further our knowledge of these remarkable features of the transcriptome.
988 _aSpringer_Protocols_2020
650 7 _2embne
_9144879
_aGenética médica
776 0 8 _iPrinted edition:
_z9781493999033
776 0 8 _iPrinted edition:
_z9781493999057
776 0 8 _iPrinted edition:
_z9781493999064
856 4 0 _uhttps://go.openathens.net/redirector/universidadeuropea.es?url=https://doi.org/10.1007/978-1-4939-9904-0
_zAcceso a este recurso digital (usuarios Universidad Europea de Madrid)
942 _2lcc
_cLE
998 _b05/2023
_dz
_eb
_zSI